SNP Detail For rs1129187
1.Mapping Information
Human SNP ID rs1129187
Human chromosome chr6
Human SNP position 42964462
Pig chromosome chr7
Pig SNP position 43490142
2.Annotation Information
PubMed ID25778476
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25778476
StudyA novel Alzheimer disease locus located near the gene encoding tau protein.
Disease/TraitAlzheimer__s disease in APOE e4+ carriers
Initial sample10,352 cases, 9,207 controls
Replication sample1,250 European ancestry cases, 536 European ancestry controls
Region6p21.1
Chromosome idchr6
Chromosome position42964462
Reported genePEX6
Mapped genePEX6
Upstream gene id
Downstream gene id
SNP gene ids5190
Upstream gene distance
Downstream gene distance
SNP risk allelers1129187-T
SNPsrs1129187
Merged0
SNP id current1129187
Contextmissense_variant
Intergenic0
Allele frequency0.45
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.13
%95 Ci[1.07-1.19]
PlatformNR [NR]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002813