Human SNP ID | rs1129187 |
---|---|
Human chromosome | chr6 |
Human SNP position | 42964462 |
Pig chromosome | chr7 |
Pig SNP position | 43490142 |
PubMed ID | 25778476 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25778476 |
Study | A novel Alzheimer disease locus located near the gene encoding tau protein. |
Disease/Trait | Alzheimer__s disease in APOE e4+ carriers |
Initial sample | 10,352 cases, 9,207 controls |
Replication sample | 1,250 European ancestry cases, 536 European ancestry controls |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 42964462 |
Reported gene | PEX6 |
Mapped gene | PEX6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5190 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1129187-T |
SNPs | rs1129187 |
Merged | 0 |
SNP id current | 1129187 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.45 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.13 |
%95 Ci | [1.07-1.19] |
Platform | NR [NR] |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST002813 |