SNP Detail For rs11255841
1.Mapping Information
Human SNP ID rs11255841
Human chromosome chr10
Human SNP position 8697617
Pig chromosome chr10
Pig SNP position 69055635
2.Annotation Information
PubMed ID24737748
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24737748
StudyIdentification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.
Disease/TraitColorectal cancer
Initial sample5,626 European ancestry cases, 7,817 European ancestry controls
Replication sample14,037 European ancestry cases, 15,937 European ancestry controls
Region10p14
Chromosome idchr10
Chromosome position8697617
Reported geneGATA3
Mapped geneLOC105376400
Upstream gene id
Downstream gene id
SNP gene ids105376400
Upstream gene distance
Downstream gene distance
SNP risk allelers11255841-T
SNPsrs11255841
Merged0
SNP id current11255841
Contextintergenic_variant
Intergenic0
Allele frequency0.68
P value0.00000000007
Pvalue mlog10.1549019599857
P value text
Or beta1.19
%95 Ci[NR]
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST002411
PubMed ID25990418
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/25990418
StudyA new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.
Disease/TraitColorectal cancer
Initial sample7,577 European ancestry cases, 9,979 European ancestry controls
Replication sampleNA
Region10p14
Chromosome idchr10
Chromosome position8697617
Reported geneGATA3
Mapped geneLOC105376400
Upstream gene id
Downstream gene id
SNP gene ids105376400
Upstream gene distance
Downstream gene distance
SNP risk allelers11255841-T
SNPsrs11255841
Merged0
SNP id current11255841
Contextintergenic_variant
Intergenic0
Allele frequency0.68
P value0.0000000000004
Pvalue mlog12.397940008672
P value text
Or beta1.18
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 10000000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST002919