Human SNP ID | rs11255841 |
---|---|
Human chromosome | chr10 |
Human SNP position | 8697617 |
Pig chromosome | chr10 |
Pig SNP position | 69055635 |
PubMed ID | 24737748 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24737748 |
Study | Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis. |
Disease/Trait | Colorectal cancer |
Initial sample | 5,626 European ancestry cases, 7,817 European ancestry controls |
Replication sample | 14,037 European ancestry cases, 15,937 European ancestry controls |
Region | 10p14 |
Chromosome id | chr10 |
Chromosome position | 8697617 |
Reported gene | GATA3 |
Mapped gene | LOC105376400 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376400 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11255841-T |
SNPs | rs11255841 |
Merged | 0 |
SNP id current | 11255841 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.68 |
P value | 0.00000000007 |
Pvalue mlog | 10.1549019599857 |
P value text | |
Or beta | 1.19 |
%95 Ci | [NR] |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002411 |
PubMed ID | 25990418 |
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/25990418 |
Study | A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer. |
Disease/Trait | Colorectal cancer |
Initial sample | 7,577 European ancestry cases, 9,979 European ancestry controls |
Replication sample | NA |
Region | 10p14 |
Chromosome id | chr10 |
Chromosome position | 8697617 |
Reported gene | GATA3 |
Mapped gene | LOC105376400 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376400 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11255841-T |
SNPs | rs11255841 |
Merged | 0 |
SNP id current | 11255841 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.68 |
P value | 0.0000000000004 |
Pvalue mlog | 12.397940008672 |
P value text | |
Or beta | 1.18 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 10000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002919 |