SNP Detail For rs11249878
1.Mapping Information
Human SNP ID rs11249878
Human chromosome chr8
Human SNP position 8692745
Pig chromosome chr17
Pig SNP position 166562
2.Annotation Information
PubMed ID26451028
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/26451028
StudyWhite Matter Lesion Progression: Genome-Wide Search for Genetic Influences.
Disease/TraitWhite matter lesion progression
Initial sample1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls
Replication sampleNA
Region8p23.1
Chromosome idchr8
Chromosome position8692745
Reported geneCLDN23
Mapped geneLOC105379225 - CLDN23
Upstream gene id105379225
Downstream gene id137075
SNP gene ids
Upstream gene distance5766
Downstream gene distance9411
SNP risk allelers11249878-C
SNPsrs11249878
Merged
SNP id current11249878
Contextintergenic_variant
Intergenic1
Allele frequency0.3
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.27
%95 Ci[NR]
PlatformAffymetrix, Illumina [up to 2543887] (imputed)
CNVN
Mapped traitwhite matter lesion progression measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007746
Study accessionGCST003151