Human SNP ID | rs11249433 |
---|---|
Human chromosome | chr1 |
Human SNP position | 121538815 |
Pig chromosome | chr16 |
Pig SNP position | 31732643 |
PubMed ID | 19330030 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19330030 |
Study | A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1). |
Disease/Trait | Breast cancer |
Initial sample | 1,145 European ancestry cases, 1,142 European ancestry controls |
Replication sample | 8,625 European ancestry cases, 9,657 European ancestry controls |
Region | 1p11.2 |
Chromosome id | chr1 |
Chromosome position | 121538815 |
Reported gene | intergenic |
Mapped gene | EMBP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 647121 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11249433-C |
SNPs | rs11249433 |
Merged | 0 |
SNP id current | 11249433 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.0000000007 |
Pvalue mlog | 9.15490195998574 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.09-1.24] (Het) |
Platform | Illumina [528173] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000365 |
PubMed ID | 23535729 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 1p11.2 |
Chromosome id | chr1 |
Chromosome position | 121538815 |
Reported gene | intergenic |
Mapped gene | EMBP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 647121 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11249433-G |
SNPs | rs11249433 |
Merged | 0 |
SNP id current | 11249433 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 2E-26 |
Pvalue mlog | 25.698970004336 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.07-1.11] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |