Human SNP ID | rs11247230 |
---|---|
Human chromosome | chr15 |
Human SNP position | 100656800 |
Pig chromosome | chr1 |
Pig SNP position | 155449924 |
PubMed ID | 25631615 |
---|---|
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic cup area |
Initial sample | 15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals |
Replication sample | NA |
Region | 15q26.3 |
Chromosome id | chr15 |
Chromosome position | 100656800 |
Reported gene | ASB7 |
Mapped gene | ASB7 - LOC105371024 |
Upstream gene id | 140460 |
Downstream gene id | 105371024 |
SNP gene ids | |
Upstream gene distance | 5099 |
Downstream gene distance | 59252 |
SNP risk allele | rs11247230-G |
SNPs | rs11247230 |
Merged | 0 |
SNP id current | 11247230 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.34 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.014 |
%95 Ci | [0.0081-0.0199] unit increase |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | optic cup area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006940 |
Study accession | GCST002764 |
PubMed ID | 25631615 |
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic cup area |
Initial sample | 15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals |
Replication sample | NA |
Region | 15q26.3 |
Chromosome id | chr15 |
Chromosome position | 100656800 |
Reported gene | ASB7 |
Mapped gene | ASB7 - LOC105371024 |
Upstream gene id | 140460 |
Downstream gene id | 105371024 |
SNP gene ids | |
Upstream gene distance | 5099 |
Downstream gene distance | 59252 |
SNP risk allele | rs11247230-G |
SNPs | rs11247230 |
Merged | 0 |
SNP id current | 11247230 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.34 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (EA) |
Or beta | 0.014 |
%95 Ci | [0.0081-0.0199] unit increase |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | optic cup area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006940 |
Study accession | GCST002764 |