SNP Detail For rs11247230
1.Mapping Information
Human SNP ID rs11247230
Human chromosome chr15
Human SNP position 100656800
Pig chromosome chr1
Pig SNP position 155449924
2.Annotation Information
PubMed ID25631615
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/25631615
StudyMeta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.
Disease/TraitOptic cup area
Initial sample15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals
Replication sampleNA
Region15q26.3
Chromosome idchr15
Chromosome position100656800
Reported geneASB7
Mapped geneASB7 - LOC105371024
Upstream gene id140460
Downstream gene id105371024
SNP gene ids
Upstream gene distance5099
Downstream gene distance59252
SNP risk allelers11247230-G
SNPsrs11247230
Merged0
SNP id current11247230
Contextintergenic_variant
Intergenic1
Allele frequency0.34
P value0.00000001
Pvalue mlog8
P value text
Or beta0.014
%95 Ci[0.0081-0.0199] unit increase
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitoptic cup area measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006940
Study accessionGCST002764
PubMed ID25631615
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/25631615
StudyMeta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.
Disease/TraitOptic cup area
Initial sample15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals
Replication sampleNA
Region15q26.3
Chromosome idchr15
Chromosome position100656800
Reported geneASB7
Mapped geneASB7 - LOC105371024
Upstream gene id140460
Downstream gene id105371024
SNP gene ids
Upstream gene distance5099
Downstream gene distance59252
SNP risk allelers11247230-G
SNPsrs11247230
Merged0
SNP id current11247230
Contextintergenic_variant
Intergenic1
Allele frequency0.34
P value0.000003
Pvalue mlog5.52287874528033
P value text(EA)
Or beta0.014
%95 Ci[0.0081-0.0199] unit increase
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitoptic cup area measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006940
Study accessionGCST002764