Human SNP ID | rs11246602 |
---|---|
Human chromosome | chr11 |
Human SNP position | 54607190 |
Pig chromosome | chr2 |
Pig SNP position | 14791939 |
PubMed ID | 24097068 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 11q11 |
Chromosome id | chr11 |
Chromosome position | 54607190 |
Reported gene | OR4C46 |
Mapped gene | OR4C46 - OR4A4P |
Upstream gene id | 119749 |
Downstream gene id | 390134 |
SNP gene ids | |
Upstream gene distance | 3192 |
Downstream gene distance | 52477 |
SNP risk allele | rs11246602-C |
SNPs | rs11246602 |
Merged | 0 |
SNP id current | 11246602 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.15 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 0.034 |
%95 Ci | [NR] unit increase |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002223 |