SNP Detail For rs11246602
1.Mapping Information
Human SNP ID rs11246602
Human chromosome chr11
Human SNP position 54607190
Pig chromosome chr2
Pig SNP position 14791939
2.Annotation Information
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitHDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region11q11
Chromosome idchr11
Chromosome position54607190
Reported geneOR4C46
Mapped geneOR4C46 - OR4A4P
Upstream gene id119749
Downstream gene id390134
SNP gene ids
Upstream gene distance3192
Downstream gene distance52477
SNP risk allelers11246602-C
SNPsrs11246602
Merged0
SNP id current11246602
Contextupstream_gene_variant
Intergenic1
Allele frequency0.15
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta0.034
%95 Ci[NR] unit increase
PlatformNR [NR] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002223