SNP Detail For rs11245052
1.Mapping Information
Human SNP ID rs11245052
Human chromosome chr10
Human SNP position 126579071
Pig chromosome chr14
Pig SNP position 147586965
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (MHPG)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region10q26.2
Chromosome idchr10
Chromosome position126579071
Reported geneC10orf90
Mapped geneC10orf90
Upstream gene id
Downstream gene id
SNP gene ids118611
Upstream gene distance
Downstream gene distance
SNP risk allelers11245052-A
SNPsrs11245052
Merged0
SNP id current11245052
Contextintron_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.3034
%95 Ciunit decrease
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitMHPG measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005133
Study accessionGCST001822