SNP Detail For rs11240074
1.Mapping Information
Human SNP ID rs11240074
Human chromosome chr1
Human SNP position 147524657
Pig chromosome chr4
Pig SNP position 109903520
2.Annotation Information
PubMed ID25760438
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25760438
StudyFirst genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls
Replication sampleNA
Region1q21.2
Chromosome idchr1
Chromosome position147524657
Reported geneBCL9, CHD1L
Mapped geneLINC00624 - BCL9
Upstream gene id100289211
Downstream gene id607
SNP gene ids
Upstream gene distance6782
Downstream gene distance16744
SNP risk allelers11240074-?
SNPsrs11240074
Merged0
SNP id current11240074
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.21
%95 Ci[0.11-0.31] unit increase
PlatformIllumina [1075436] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002806