SNP Detail For rs11236797
1.Mapping Information
Human SNP ID rs11236797
Human chromosome chr11
Human SNP position 76588605
Pig chromosome chr9
Pig SNP position 11852371
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region11q13.5
Chromosome idchr11
Chromosome position76588605
Reported geneNR
Mapped geneC11orf30 - LOC101928813
Upstream gene id56946
Downstream gene id101928813
SNP gene ids
Upstream gene distance35706
Downstream gene distance19546
SNP risk allelers11236797-?
SNPsrs11236797
Merged
SNP id current11236797
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value9E-52
Pvalue mlog51.0457574905606
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043