SNP Detail For rs112364629
1.Mapping Information
Human SNP ID rs112364629
Human chromosome chr3
Human SNP position 39950732
Pig chromosome chr13
Pig SNP position 26715707
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region3p22.1
Chromosome idchr3
Chromosome position39950732
Reported geneNR
Mapped geneMYRIP
Upstream gene id
Downstream gene id
SNP gene ids25924
Upstream gene distance
Downstream gene distance
SNP risk allelers112364629-?
SNPsrs112364629
Merged
SNP id current112364629
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta0.4197
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957