Human SNP ID | rs11228565 |
---|---|
Human chromosome | chr11 |
Human SNP position | 69211113 |
Pig chromosome | chr2 |
Pig SNP position | 2640060 |
PubMed ID | 19767754 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19767754 |
Study | Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility. |
Disease/Trait | Prostate cancer |
Initial sample | Up to 1,968 European ancestry cases, 35,382 European ancestry controls |
Replication sample | Up to 11,806 European ancestry cases, 12,387 European ancestry controls |
Region | 11q13.3 |
Chromosome id | chr11 |
Chromosome position | 69211113 |
Reported gene | intergenic |
Mapped gene | LOC105369366 - LOC105369367 |
Upstream gene id | 105369366 |
Downstream gene id | 105369367 |
SNP gene ids | |
Upstream gene distance | 33137 |
Downstream gene distance | 17636 |
SNP risk allele | rs11228565-A |
SNPs | rs11228565 |
Merged | 0 |
SNP id current | 11228565 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.000000000007 |
Pvalue mlog | 11.1549019599857 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.16-1.31] |
Platform | Illumina [310520] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST000489 |