SNP Detail For rs11228565
1.Mapping Information
Human SNP ID rs11228565
Human chromosome chr11
Human SNP position 69211113
Pig chromosome chr2
Pig SNP position 2640060
2.Annotation Information
PubMed ID19767754
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19767754
StudyGenome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.
Disease/TraitProstate cancer
Initial sampleUp to 1,968 European ancestry cases, 35,382 European ancestry controls
Replication sampleUp to 11,806 European ancestry cases, 12,387 European ancestry controls
Region11q13.3
Chromosome idchr11
Chromosome position69211113
Reported geneintergenic
Mapped geneLOC105369366 - LOC105369367
Upstream gene id105369366
Downstream gene id105369367
SNP gene ids
Upstream gene distance33137
Downstream gene distance17636
SNP risk allelers11228565-A
SNPsrs11228565
Merged0
SNP id current11228565
Contextintergenic_variant
Intergenic1
Allele frequency0.2
P value0.000000000007
Pvalue mlog11.1549019599857
P value text
Or beta1.23
%95 Ci[1.16-1.31]
PlatformIllumina [310520]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST000489