Human SNP ID | rs11226373 |
---|---|
Human chromosome | chr11 |
Human SNP position | 104463511 |
Pig chromosome | chr9 |
Pig SNP position | 38847430 |
PubMed ID | 20031604 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20031604 |
Study | Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels. |
Disease/Trait | Matrix metalloproteinase levels |
Initial sample | 778 Old Order Amish individuals |
Replication sample | NA |
Region | 11q22.3 |
Chromosome id | chr11 |
Chromosome position | 104463511 |
Reported gene | MMP-3, MMP-1 |
Mapped gene | LOC102723879 - LOC102723895 |
Upstream gene id | 102723879 |
Downstream gene id | 102723895 |
SNP gene ids | |
Upstream gene distance | 104522 |
Downstream gene distance | 104978 |
SNP risk allele | rs11226373-G |
SNPs | rs11226373 |
Merged | 0 |
SNP id current | 11226373 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.15 |
P value | 0.000000000000000002 |
Pvalue mlog | 17.698970004336 |
P value text | |
Or beta | 0.44 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix [338079] |
CNV | N |
Mapped trait | matrix metalloproteinase measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004744 |
Study accession | GCST000450 |