SNP Detail For rs11226373
1.Mapping Information
Human SNP ID rs11226373
Human chromosome chr11
Human SNP position 104463511
Pig chromosome chr9
Pig SNP position 38847430
2.Annotation Information
PubMed ID20031604
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20031604
StudyGenome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.
Disease/TraitMatrix metalloproteinase levels
Initial sample778 Old Order Amish individuals
Replication sampleNA
Region11q22.3
Chromosome idchr11
Chromosome position104463511
Reported geneMMP-3, MMP-1
Mapped geneLOC102723879 - LOC102723895
Upstream gene id102723879
Downstream gene id102723895
SNP gene ids
Upstream gene distance104522
Downstream gene distance104978
SNP risk allelers11226373-G
SNPsrs11226373
Merged0
SNP id current11226373
Contextintron_variant
Intergenic1
Allele frequency0.15
P value0.000000000000000002
Pvalue mlog17.698970004336
P value text
Or beta0.44
%95 Ci[NR] unit increase
PlatformAffymetrix [338079]
CNVN
Mapped traitmatrix metalloproteinase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004744
Study accessionGCST000450