SNP Detail For rs11216126
1.Mapping Information
Human SNP ID rs11216126
Human chromosome chr11
Human SNP position 116746524
Pig chromosome chr9
Pig SNP position 49207339
2.Annotation Information
PubMed ID21909109
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21909109
StudyLarge-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.
Disease/TraitHDL cholesterol
Initial sample12,545 Korean ancestry individuals
Replication sampleUp to 30,395 East Asian ancestry individuals
Region11q23.3
Chromosome idchr11
Chromosome position116746524
Reported geneintergenic
Mapped geneLOC101929011 - BUD13
Upstream gene id101929011
Downstream gene id84811
SNP gene ids
Upstream gene distance88272
Downstream gene distance1646
SNP risk allelers11216126-C
SNPsrs11216126
Merged0
SNP id current11216126
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.2
P value3E-34
Pvalue mlog33.5228787452803
P value text
Or beta0.0322
%95 Ci[0.027-0.037] mg/dL increase
PlatformAffymetrix [~ 2200000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST001237