Human SNP ID | rs11216126 |
---|---|
Human chromosome | chr11 |
Human SNP position | 116746524 |
Pig chromosome | chr9 |
Pig SNP position | 49207339 |
PubMed ID | 21909109 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21909109 |
Study | Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. |
Disease/Trait | HDL cholesterol |
Initial sample | 12,545 Korean ancestry individuals |
Replication sample | Up to 30,395 East Asian ancestry individuals |
Region | 11q23.3 |
Chromosome id | chr11 |
Chromosome position | 116746524 |
Reported gene | intergenic |
Mapped gene | LOC101929011 - BUD13 |
Upstream gene id | 101929011 |
Downstream gene id | 84811 |
SNP gene ids | |
Upstream gene distance | 88272 |
Downstream gene distance | 1646 |
SNP risk allele | rs11216126-C |
SNPs | rs11216126 |
Merged | 0 |
SNP id current | 11216126 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 3E-34 |
Pvalue mlog | 33.5228787452803 |
P value text | |
Or beta | 0.0322 |
%95 Ci | [0.027-0.037] mg/dL increase |
Platform | Affymetrix [~ 2200000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST001237 |