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SNP Detail For rs11214775
1.Mapping Information
| Human SNP ID | rs11214775 |
|---|---|
| Human chromosome | chr11 |
| Human SNP position | 113936459 |
| Pig chromosome | chr9 |
| Pig SNP position | 46357883 |
2.Annotation Information
| PubMed ID | 25217961 |
|---|---|
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25217961 |
| Study | A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. |
| Disease/Trait | Prostate cancer |
| Initial sample | 34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls |
| Replication sample | NA |
| Region | 11q23.2 |
| Chromosome id | chr11 |
| Chromosome position | 113936459 |
| Reported gene | HTR3B |
| Mapped gene | HTR3B |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9177 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11214775-G |
| SNPs | rs11214775 |
| Merged | 0 |
| SNP id current | 11214775 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.71 |
| P value | 0.00000005 |
| Pvalue mlog | 7.30102999566398 |
| P value text | |
| Or beta | 1.07 |
| %95 Ci | [1.04-1.09] |
| Platform | Affymetrix, Illumina [up to 16852405] (imputed) |
| CNV | N |
| Mapped trait | prostate carcinoma |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
| Study accession | GCST002606 |
| PubMed ID | 25217961 |
| Journal | Nat Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25217961 |
| Study | A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. |
| Disease/Trait | Prostate cancer |
| Initial sample | 34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls |
| Replication sample | NA |
| Region | 11q23.2 |
| Chromosome id | chr11 |
| Chromosome position | 113936459 |
| Reported gene | HTR3B |
| Mapped gene | HTR3B |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9177 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11214775-G |
| SNPs | rs11214775 |
| Merged | 0 |
| SNP id current | 11214775 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.71 |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | (EA) |
| Or beta | 1.08 |
| %95 Ci | [1.05-1.11] |
| Platform | Affymetrix, Illumina [up to 16852405] (imputed) |
| CNV | N |
| Mapped trait | prostate carcinoma |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
| Study accession | GCST002606 |
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