SNP Detail For rs11209261
1.Mapping Information
Human SNP ID rs11209261
Human chromosome chr1
Human SNP position 68319530
Pig chromosome chr6
Pig SNP position 133631213
2.Annotation Information
PubMed ID22837378
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22837378
StudyGenome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.
Disease/TraitAirflow obstruction
Initial sampleup to 3,368 European ancestry cases, up to 29,507 European ancestry controls
Replication sample331 European ancestry cases, 2,550 European ancestry controls
Region1p31.3
Chromosome idchr1
Chromosome position68319530
Reported geneGPR177
Mapped geneLOC105378782 - RPE65
Upstream gene id105378782
Downstream gene id6121
SNP gene ids
Upstream gene distance15834
Downstream gene distance109294
SNP risk allelers11209261-?
SNPsrs11209261
Merged0
SNP id current11209261
Contextintergenic_variant
Intergenic1
Allele frequency0.24
P value0.000003
Pvalue mlog5.52287874528033
P value text(FEV1 65%)
Or beta1.2346
%95 Ci[NR]
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892
Study accessionGCST001621