Human SNP ID | rs11209261 |
---|---|
Human chromosome | chr1 |
Human SNP position | 68319530 |
Pig chromosome | chr6 |
Pig SNP position | 133631213 |
PubMed ID | 22837378 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22837378 |
Study | Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. |
Disease/Trait | Airflow obstruction |
Initial sample | up to 3,368 European ancestry cases, up to 29,507 European ancestry controls |
Replication sample | 331 European ancestry cases, 2,550 European ancestry controls |
Region | 1p31.3 |
Chromosome id | chr1 |
Chromosome position | 68319530 |
Reported gene | GPR177 |
Mapped gene | LOC105378782 - RPE65 |
Upstream gene id | 105378782 |
Downstream gene id | 6121 |
SNP gene ids | |
Upstream gene distance | 15834 |
Downstream gene distance | 109294 |
SNP risk allele | rs11209261-? |
SNPs | rs11209261 |
Merged | 0 |
SNP id current | 11209261 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.24 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (FEV1 65%) |
Or beta | 1.2346 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [up to 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892 |
Study accession | GCST001621 |