SNP Detail For rs11207995
1.Mapping Information
Human SNP ID rs11207995
Human chromosome chr1
Human SNP position 62583880
Pig chromosome chr6
Pig SNP position 138128300
2.Annotation Information
PubMed ID24386095
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24386095
StudyA genome wide association study identifies common variants associated with lipid levels in the Chinese population.
Disease/TraitLipid traits
Initial sample3,451 Han Chinese ancestry individuals
Replication sample8,830 Han Chinese ancestry individuals
Region1p31.3
Chromosome idchr1
Chromosome position62583880
Reported geneDOCK7
Mapped geneDOCK7
Upstream gene id
Downstream gene id
SNP gene ids85440
Upstream gene distance
Downstream gene distance
SNP risk allelers11207995-C
SNPsrs11207995
Merged0
SNP id current11207995
Contextintron_variant
Intergenic0
Allele frequency0.22
P value0.0000000006
Pvalue mlog9.22184874961635
P value text(TC)
Or beta0.012
%95 Ci[0.00024-0.02376] mmol/L decrease
PlatformAffymetrix, Illumina [up to 2249917] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002321
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region1p31.3
Chromosome idchr1
Chromosome position62583880
Reported geneANGPTL3, DOCK7
Mapped geneDOCK7
Upstream gene id
Downstream gene id
SNP gene ids85440
Upstream gene distance
Downstream gene distance
SNP risk allelers11207995-A
SNPsrs11207995
Merged0
SNP id current11207995
Contextintron_variant
Intergenic0
Allele frequency0.67
P value2E-34
Pvalue mlog33.698970004336
P value text
Or beta0.076
%95 Ci[0.064-0.088] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896