Human SNP ID | rs11207995 |
---|---|
Human chromosome | chr1 |
Human SNP position | 62583880 |
Pig chromosome | chr6 |
Pig SNP position | 138128300 |
PubMed ID | 24386095 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24386095 |
Study | A genome wide association study identifies common variants associated with lipid levels in the Chinese population. |
Disease/Trait | Lipid traits |
Initial sample | 3,451 Han Chinese ancestry individuals |
Replication sample | 8,830 Han Chinese ancestry individuals |
Region | 1p31.3 |
Chromosome id | chr1 |
Chromosome position | 62583880 |
Reported gene | DOCK7 |
Mapped gene | DOCK7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 85440 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11207995-C |
SNPs | rs11207995 |
Merged | 0 |
SNP id current | 11207995 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.0000000006 |
Pvalue mlog | 9.22184874961635 |
P value text | (TC) |
Or beta | 0.012 |
%95 Ci | [0.00024-0.02376] mmol/L decrease |
Platform | Affymetrix, Illumina [up to 2249917] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002321 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 1p31.3 |
Chromosome id | chr1 |
Chromosome position | 62583880 |
Reported gene | ANGPTL3, DOCK7 |
Mapped gene | DOCK7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 85440 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11207995-A |
SNPs | rs11207995 |
Merged | 0 |
SNP id current | 11207995 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.67 |
P value | 2E-34 |
Pvalue mlog | 33.698970004336 |
P value text | |
Or beta | 0.076 |
%95 Ci | [0.064-0.088] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |