SNP Detail For rs1120787
1.Mapping Information
Human SNP ID rs1120787
Human chromosome chr18
Human SNP position 57316323
Pig chromosome chr5
Pig SNP position 79452446
2.Annotation Information
PubMed ID20041166
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20041166
StudyCommon genetic variation and the control of HIV-1 in humans.
Disease/TraitHIV-1 control
Initial sample2,362 European ancestry cases
Replication sampleNA
Region18q21.31
Chromosome idchr18
Chromosome position57316323
Reported geneintergenic
Mapped geneLOC105372138
Upstream gene id
Downstream gene id
SNP gene ids105372138
Upstream gene distance
Downstream gene distance
SNP risk allelers1120787-?
SNPsrs1120787
Merged0
SNP id current1120787
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text(progression)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000549