SNP Detail For rs11206801
1.Mapping Information
Human SNP ID rs11206801
Human chromosome chr1
Human SNP position 56385014
Pig chromosome chr6
Pig SNP position 143824602
2.Annotation Information
PubMed ID20932310
JournalBMC Neurol
Linkwww.ncbi.nlm.nih.gov/pubmed/20932310
StudyGenome-wide association reveals genetic effects on human Aβ42 and τ protein levels in cerebrospinal fluids: a case control study.
Disease/TraitCerebrospinal AB1-42 levels
Initial sample172 European ancestry Alzheimer__s disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls
Replication sampleNA
Region1p32.2
Chromosome idchr1
Chromosome position56385014
Reported geneintergenic
Mapped geneLOC105378743 - LOC105378744
Upstream gene id105378743
Downstream gene id105378744
SNP gene ids
Upstream gene distance157683
Downstream gene distance29565
SNP risk allelers11206801-A
SNPsrs11206801
Merged0
SNP id current11206801
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000006
Pvalue mlog7.22184874961635
P value text(Controls)
Or beta
%95 Ci
PlatformIllumina [498205]
CNVN
Mapped traitbeta-amyloid 1-42 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004670
Study accessionGCST000827