SNP Detail For rs11206226
1.Mapping Information
Human SNP ID rs11206226
Human chromosome chr1
Human SNP position 53854664
Pig chromosome chr6
Pig SNP position 146144056
2.Annotation Information
PubMed ID22719876
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22719876
StudyGenetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.
Disease/TraitNonalcoholic fatty liver disease
Initial sample529 Japanese ancestry cases, 932 Japanese ancestry controls
Replication sampleNA
Region1p32.3
Chromosome idchr1
Chromosome position53854664
Reported geneYIPF1
Mapped geneYIPF1
Upstream gene id
Downstream gene id
SNP gene ids54432
Upstream gene distance
Downstream gene distance
SNP risk allelers11206226-A
SNPsrs11206226
Merged0
SNP id current11206226
Contextintron_variant
Intergenic0
Allele frequency0.848
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.72
%95 Ci[1.35-2.22]
PlatformIllumina [484751]
CNVN
Mapped traitnon-alcoholic fatty liver disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095
Study accessionGCST001576