Human SNP ID | rs11193561 |
---|---|
Human chromosome | chr10 |
Human SNP position | 107614626 |
Pig chromosome | chr14 |
Pig SNP position | 128911862 |
PubMed ID | 23472165 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23472165 |
Study | Genome-wide association study link novel loci to endometriosis. |
Disease/Trait | Endometriosis |
Initial sample | 1,514 European ancestry casses, 12,660 European ancestry controls |
Replication sample | 505 European ancestry cases, 1,811 European ancestry controls |
Region | 10q25.1 |
Chromosome id | chr10 |
Chromosome position | 107614626 |
Reported gene | SORCS1, LOC100128304 |
Mapped gene | LOC105378474 - LOC101927573 |
Upstream gene id | 105378474 |
Downstream gene id | 101927573 |
SNP gene ids | |
Upstream gene distance | 209790 |
Downstream gene distance | 74943 |
SNP risk allele | rs11193561-A |
SNPs | rs11193561 |
Merged | 0 |
SNP id current | 11193561 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.239 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.19 |
%95 Ci | [NR] |
Platform | Illumina [580699] |
CNV | N |
Mapped trait | endometriosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001065 |
Study accession | GCST001894 |