Human SNP ID | rs11190870 |
---|---|
Human chromosome | chr10 |
Human SNP position | 101219450 |
Pig chromosome | chr14 |
Pig SNP position | 122020312 |
PubMed ID | 22019779 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22019779 |
Study | A genome-wide association study identifies common variants near LBX1 associated with adolescent idiopathic scoliosis. |
Disease/Trait | Scoliosis |
Initial sample | 1,033 Japanese ancestry adolescent female cases, 1,473 Japanese ancestry female controls |
Replication sample | 326 Japanese ancestry adolescent female cases, 9,823 Japanese ancestry female controls |
Region | 10q24.32 |
Chromosome id | chr10 |
Chromosome position | 101219450 |
Reported gene | LBX1 |
Mapped gene | LINC01514 - LBX1 |
Upstream gene id | 101927396 |
Downstream gene id | 10660 |
SNP gene ids | |
Upstream gene distance | 25303 |
Downstream gene distance | 7526 |
SNP risk allele | rs11190870-? |
SNPs | rs11190870 |
Merged | 0 |
SNP id current | 11190870 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.57 |
P value | 1E-19 |
Pvalue mlog | 19 |
P value text | |
Or beta | 1.56 |
%95 Ci | [1.41-1.71] |
Platform | Illumina [455121] |
CNV | N |
Mapped trait | scoliosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004273 |
Study accession | GCST001293 |
PubMed ID | 26211971 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26211971 |
Study | A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis. |
Disease/Trait | Adolescent idiopathic scoliosis |
Initial sample | 2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls |
Replication sample | 2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls |
Region | 10q24.32 |
Chromosome id | chr10 |
Chromosome position | 101219450 |
Reported gene | LBX1 |
Mapped gene | LINC01514 - LBX1 |
Upstream gene id | 101927396 |
Downstream gene id | 10660 |
SNP gene ids | |
Upstream gene distance | 25303 |
Downstream gene distance | 7526 |
SNP risk allele | rs11190870-T |
SNPs | rs11190870 |
Merged | 0 |
SNP id current | 11190870 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.557 |
P value | 5E-39 |
Pvalue mlog | 38.3010299956639 |
P value text | |
Or beta | 1.61 |
%95 Ci | [1.50-1.73] |
Platform | Illumina [4420789] (imputed) |
CNV | N |
Mapped trait | adolescent idiopathic scoliosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005423 |
Study accession | GCST003052 |