SNP Detail For rs11190604
1.Mapping Information
Human SNP ID rs11190604
Human chromosome chr10
Human SNP position 100542700
Pig chromosome chr14
Pig SNP position 121301014
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitPalmitoleic acid (16:1n-7) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region10q24.31
Chromosome idchr10
Chromosome position100542700
Reported geneHIF1AN, SCD, SEC31B, NDUFB8, WNT8B
Mapped geneHIF1AN
Upstream gene id
Downstream gene id
SNP gene ids55662
Upstream gene distance
Downstream gene distance
SNP risk allelers11190604-A
SNPsrs11190604
Merged0
SNP id current11190604
Contextintron_variant
Intergenic0
Allele frequency0.782
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta0.0236
%95 Ciunit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001841