Human SNP ID | rs11190164 |
---|---|
Human chromosome | chr10 |
Human SNP position | 99591947 |
Pig chromosome | chr14 |
Pig SNP position | 120224674 |
PubMed ID | 26151821 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26151821 |
Study | Genome-wide association study of colorectal cancer identifies six new susceptibility loci. |
Disease/Trait | Colorectal cancer |
Initial sample | 18,299 European ancestry cases, 19,656 European ancestry controls |
Replication sample | 4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls |
Region | 10q24.2 |
Chromosome id | chr10 |
Chromosome position | 99591947 |
Reported gene | ENTPD7, COX15, CUTC, ABCC2, SLC25A28 |
Mapped gene | NKX2-3 - SLC25A28 |
Upstream gene id | 159296 |
Downstream gene id | 81894 |
SNP gene ids | |
Upstream gene distance | 55423 |
Downstream gene distance | 18571 |
SNP risk allele | rs11190164-G |
SNPs | rs11190164 |
Merged | 0 |
SNP id current | 11190164 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | (EA) |
Or beta | 1.1 |
%95 Ci | [1.05鈥?.14] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST003017 |
PubMed ID | 25990418 |
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/25990418 |
Study | A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer. |
Disease/Trait | Colorectal cancer |
Initial sample | 7,577 European ancestry cases, 9,979 European ancestry controls |
Replication sample | NA |
Region | 10q24.2 |
Chromosome id | chr10 |
Chromosome position | 99591947 |
Reported gene | SLC25A28, NKX2-3 |
Mapped gene | NKX2-3 - SLC25A28 |
Upstream gene id | 159296 |
Downstream gene id | 81894 |
SNP gene ids | |
Upstream gene distance | 55423 |
Downstream gene distance | 18571 |
SNP risk allele | rs11190164-G |
SNPs | rs11190164 |
Merged | 0 |
SNP id current | 11190164 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.13 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 10000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002919 |
PubMed ID | 26151821 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26151821 |
Study | Genome-wide association study of colorectal cancer identifies six new susceptibility loci. |
Disease/Trait | Colorectal cancer |
Initial sample | 18,299 European ancestry cases, 19,656 European ancestry controls |
Replication sample | 4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls |
Region | 10q24.2 |
Chromosome id | chr10 |
Chromosome position | 99591947 |
Reported gene | ENTPD7, COX15, CUTC, ABCC2, SLC25A28 |
Mapped gene | NKX2-3 - SLC25A28 |
Upstream gene id | 159296 |
Downstream gene id | 81894 |
SNP gene ids | |
Upstream gene distance | 55423 |
Downstream gene distance | 18571 |
SNP risk allele | rs11190164-G |
SNPs | rs11190164 |
Merged | 0 |
SNP id current | 11190164 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.06-1.12] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST003017 |