SNP Detail For rs11190141
1.Mapping Information
Human SNP ID rs11190141
Human chromosome chr10
Human SNP position 99532633
Pig chromosome chr14
Pig SNP position 120165980
2.Annotation Information
PubMed ID22412388
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22412388
StudyA genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls
Replication sample971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls
Region10q24.2
Chromosome idchr10
Chromosome position99532633
Reported geneSLC25A28, GOT1, ENTPD7, CNNM1, COX15, CUTC, NKX2-3
Mapped geneLINC01475 - NKX2-3
Upstream gene id101927324
Downstream gene id159296
SNP gene ids
Upstream gene distance1456
Downstream gene distance300
SNP risk allelers11190141-C
SNPsrs11190141
Merged0
SNP id current11190141
Contextupstream_gene_variant
Intergenic1
Allele frequency0.739
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta1.34
%95 Ci[1.25-1.43]
PlatformAffymetrix, Illumina [1060934] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001438