Human SNP ID | rs11190141 |
---|---|
Human chromosome | chr10 |
Human SNP position | 99532633 |
Pig chromosome | chr14 |
Pig SNP position | 120165980 |
PubMed ID | 22412388 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22412388 |
Study | A genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls |
Replication sample | 971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls |
Region | 10q24.2 |
Chromosome id | chr10 |
Chromosome position | 99532633 |
Reported gene | SLC25A28, GOT1, ENTPD7, CNNM1, COX15, CUTC, NKX2-3 |
Mapped gene | LINC01475 - NKX2-3 |
Upstream gene id | 101927324 |
Downstream gene id | 159296 |
SNP gene ids | |
Upstream gene distance | 1456 |
Downstream gene distance | 300 |
SNP risk allele | rs11190141-C |
SNPs | rs11190141 |
Merged | 0 |
SNP id current | 11190141 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.739 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | 1.34 |
%95 Ci | [1.25-1.43] |
Platform | Affymetrix, Illumina [1060934] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001438 |