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SNP Detail For rs11188352
1.Mapping Information
| Human SNP ID | rs11188352 |
|---|---|
| Human chromosome | chr10 |
| Human SNP position | 95541247 |
| Pig chromosome | chr14 |
| Pig SNP position | 116753213 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 10q24.1 |
| Chromosome id | chr10 |
| Chromosome position | 95541247 |
| Reported gene | NR |
| Mapped gene | SORBS1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10580 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11188352-G |
| SNPs | rs11188352 |
| Merged | 0 |
| SNP id current | 11188352 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.042712513900135 |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | (IGP12) |
| Or beta | 0.4192 |
| %95 Ci | [0.24-0.6] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 10q24.1 |
| Chromosome id | chr10 |
| Chromosome position | 95541247 |
| Reported gene | NR |
| Mapped gene | SORBS1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10580 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11188352-G |
| SNPs | rs11188352 |
| Merged | 0 |
| SNP id current | 11188352 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.0425983854693141 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | (IGP52) |
| Or beta | 0.4264 |
| %95 Ci | [0.24-0.61] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 10q24.1 |
| Chromosome id | chr10 |
| Chromosome position | 95541247 |
| Reported gene | NR |
| Mapped gene | SORBS1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10580 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11188352-G |
| SNPs | rs11188352 |
| Merged | 0 |
| SNP id current | 11188352 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.0425983446750903 |
| P value | 0.000003 |
| Pvalue mlog | 5.52287874528033 |
| P value text | (IGP73) |
| Or beta | 0.4377 |
| %95 Ci | [0.25-0.62] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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