SNP Detail For rs11187157
1.Mapping Information
Human SNP ID rs11187157
Human chromosome chr10
Human SNP position 92742487
Pig chromosome chr14
Pig SNP position 113841062
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region10q23.33
Chromosome idchr10
Chromosome position92742487
Reported geneNR
Mapped geneHHEX - EXOC6
Upstream gene id3087
Downstream gene id54536
SNP gene ids
Upstream gene distance46836
Downstream gene distance92226
SNP risk allelers11187157-?
SNPsrs11187157
Merged
SNP id current11187157
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043