Human SNP ID | rs11174436 |
---|---|
Human chromosome | chr12 |
Human SNP position | 62349567 |
Pig chromosome | chr5 |
Pig SNP position | 29748074 |
PubMed ID | 24487271 |
---|---|
Journal | Inflamm Bowel Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/24487271 |
Study | Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients. |
Disease/Trait | Pyoderma gangrenosum in inflammatory bowel disease |
Initial sample | 92 European ancestry cases, 5,664 European ancestry controls |
Replication sample | NA |
Region | 12q14.1 |
Chromosome id | chr12 |
Chromosome position | 62349567 |
Reported gene | FAM19A, USP15, MON2 |
Mapped gene | USP15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9958 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11174436-A |
SNPs | rs11174436 |
Merged | 0 |
SNP id current | 11174436 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 2.3 |
%95 Ci | [1.60-3.40] |
Platform | Illumina [2017629] (imputed) |
CNV | N |
Mapped trait | pyoderma gangrenosum, inflammatory bowel disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006835, http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST002379 |