SNP Detail For rs11174436
1.Mapping Information
Human SNP ID rs11174436
Human chromosome chr12
Human SNP position 62349567
Pig chromosome chr5
Pig SNP position 29748074
2.Annotation Information
PubMed ID24487271
JournalInflamm Bowel Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/24487271
StudyClinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.
Disease/TraitPyoderma gangrenosum in inflammatory bowel disease
Initial sample92 European ancestry cases, 5,664 European ancestry controls
Replication sampleNA
Region12q14.1
Chromosome idchr12
Chromosome position62349567
Reported geneFAM19A, USP15, MON2
Mapped geneUSP15
Upstream gene id
Downstream gene id
SNP gene ids9958
Upstream gene distance
Downstream gene distance
SNP risk allelers11174436-A
SNPsrs11174436
Merged0
SNP id current11174436
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta2.3
%95 Ci[1.60-3.40]
PlatformIllumina [2017629] (imputed)
CNVN
Mapped traitpyoderma gangrenosum, inflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006835, http://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST002379