SNP Detail For rs11167764
1.Mapping Information
Human SNP ID rs11167764
Human chromosome chr5
Human SNP position 142099500
Pig chromosome chr2
Pig SNP position 149885611
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region5q31.3
Chromosome idchr5
Chromosome position142099500
Reported geneNDFIP1
Mapped geneLOC105378204
Upstream gene id
Downstream gene id
SNP gene ids105378204
Upstream gene distance
Downstream gene distance
SNP risk allelers11167764-C
SNPsrs11167764
Merged0
SNP id current11167764
Contextintergenic_variant
Intergenic0
Allele frequency0.796
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.06
%95 Ci[1.02-1.11]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879