Human SNP ID | rs11165354 |
---|---|
Human chromosome | chr1 |
Human SNP position | 91728765 |
Pig chromosome | chr4 |
Pig SNP position | 136799417 |
PubMed ID | 23209189 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/23209189 |
Study | Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21. |
Disease/Trait | Type 2 diabetes |
Initial sample | 1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls |
Replication sample | 3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls |
Region | 1p22.1 |
Chromosome id | chr1 |
Chromosome position | 91728765 |
Reported gene | TGFBR3 |
Mapped gene | TGFBR3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7049 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11165354-A |
SNPs | rs11165354 |
Merged | 0 |
SNP id current | 11165354 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.78 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (All South Asians) |
Or beta | 1.17 |
%95 Ci | [1.10-1.25] |
Platform | Illumina [536420] |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST001759 |