SNP Detail For rs11165354
1.Mapping Information
Human SNP ID rs11165354
Human chromosome chr1
Human SNP position 91728765
Pig chromosome chr4
Pig SNP position 136799417
2.Annotation Information
PubMed ID23209189
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/23209189
StudyGenome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.
Disease/TraitType 2 diabetes
Initial sample1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls
Replication sample3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls
Region1p22.1
Chromosome idchr1
Chromosome position91728765
Reported geneTGFBR3
Mapped geneTGFBR3
Upstream gene id
Downstream gene id
SNP gene ids7049
Upstream gene distance
Downstream gene distance
SNP risk allelers11165354-A
SNPsrs11165354
Merged0
SNP id current11165354
Contextintron_variant
Intergenic0
Allele frequency0.78
P value0.000004
Pvalue mlog5.39794000867203
P value text(All South Asians)
Or beta1.17
%95 Ci[1.10-1.25]
PlatformIllumina [536420]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST001759