Human SNP ID | rs11142387 |
---|---|
Human chromosome | chr9 |
Human SNP position | 70383416 |
Pig chromosome | chr1 |
Pig SNP position | 250057782 |
PubMed ID | 22344221 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22344221 |
Study | Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations. |
Disease/Trait | Body mass index |
Initial sample | 26,620 Japanese ancestry individuals |
Replication sample | 35,625 East Asian ancestry individuals |
Region | 9q21.12 |
Chromosome id | chr9 |
Chromosome position | 70383416 |
Reported gene | KLF9 |
Mapped gene | SMC5 - KLF9 |
Upstream gene id | 23137 |
Downstream gene id | 687 |
SNP gene ids | |
Upstream gene distance | 28543 |
Downstream gene distance | 1181 |
SNP risk allele | rs11142387-C |
SNPs | rs11142387 |
Merged | 0 |
SNP id current | 11142387 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.46 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 0.04 |
%95 Ci | [0.018-0.062] unit increase |
Platform | Illumina [2178018] (imputed) |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST001416 |
PubMed ID | 24861553 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24861553 |
Study | Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index. |
Disease/Trait | Body mass index |
Initial sample | 82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals |
Replication sample | Up to 47,352 East Asian ancestry individuals |
Region | 9q21.12 |
Chromosome id | chr9 |
Chromosome position | 70383416 |
Reported gene | KLF9 |
Mapped gene | SMC5 - KLF9 |
Upstream gene id | 23137 |
Downstream gene id | 687 |
SNP gene ids | |
Upstream gene distance | 28543 |
Downstream gene distance | 1181 |
SNP risk allele | rs11142387-C |
SNPs | rs11142387 |
Merged | 0 |
SNP id current | 11142387 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.41 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 0.0324 |
%95 Ci | [0.021-0.044] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002461 |
PubMed ID | 22344221 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22344221 |
Study | Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations. |
Disease/Trait | Body mass index |
Initial sample | 26,620 Japanese ancestry individuals |
Replication sample | 35,625 East Asian ancestry individuals |
Region | 2q32.2 x 9q21.12 |
Chromosome id | chr2 x 9 |
Chromosome position | 190120954 x 70383416 |
Reported gene | GDF8 x KLF9 |
Mapped gene | C2orf88 x SMC5 - KLF9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13034723-A x rs11142387-C |
SNPs | rs13034723 x rs11142387 |
Merged | 0 |
SNP id current | |
Context | intron_variant x downstream_gene_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.066 |
%95 Ci | [0.042-0.090] unit increase |
Platform | Illumina [2178018] (imputed) |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST001416 |