SNP Detail For rs11139497
1.Mapping Information
Human SNP ID rs11139497
Human chromosome chr9
Human SNP position 82125026
Pig chromosome chr1
Pig SNP position 262215429
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region9q21.32
Chromosome idchr9
Chromosome position82125026
Reported geneTLE1
Mapped geneLOC105376107
Upstream gene id
Downstream gene id
SNP gene ids105376107
Upstream gene distance
Downstream gene distance
SNP risk allelers11139497-A
SNPsrs11139497
Merged0
SNP id current11139497
Contextintron_variant
Intergenic0
Allele frequency0.337
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.069
%95 Ci[1.045-1.093]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region9q21.32
Chromosome idchr9
Chromosome position82125026
Reported geneNR
Mapped geneLOC105376107
Upstream gene id
Downstream gene id
SNP gene ids105376107
Upstream gene distance
Downstream gene distance
SNP risk allelers11139497-A
SNPsrs11139497
Merged0
SNP id current11139497
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.07
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048