SNP Detail For rs11138220
1.Mapping Information
Human SNP ID rs11138220
Human chromosome chr9
Human SNP position 79445613
Pig chromosome chr1
Pig SNP position 259134848
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in rectal cancer
Initial sample171 European ancestry cases
Replication sampleNA
Region9q21.31
Chromosome idchr9
Chromosome position79445613
Reported geneintergenic
Mapped geneCHCHD2P9 - LOC102723932
Upstream gene id645345
Downstream gene id102723932
SNP gene ids
Upstream gene distance53573
Downstream gene distance72260
SNP risk allelers11138220-?
SNPsrs11138220
Merged0
SNP id current11138220
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text(disease-free survival)
Or beta2.76
%95 Ci[1.77-4.31]
PlatformIllumina [729737]
CNVN
Mapped traitdisease free survival, rectum cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_1000657
Study accessionGCST002821