Human SNP ID | rs11138220 |
---|---|
Human chromosome | chr9 |
Human SNP position | 79445613 |
Pig chromosome | chr1 |
Pig SNP position | 259134848 |
PubMed ID | 25866641 |
---|---|
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in rectal cancer |
Initial sample | 171 European ancestry cases |
Replication sample | NA |
Region | 9q21.31 |
Chromosome id | chr9 |
Chromosome position | 79445613 |
Reported gene | intergenic |
Mapped gene | CHCHD2P9 - LOC102723932 |
Upstream gene id | 645345 |
Downstream gene id | 102723932 |
SNP gene ids | |
Upstream gene distance | 53573 |
Downstream gene distance | 72260 |
SNP risk allele | rs11138220-? |
SNPs | rs11138220 |
Merged | 0 |
SNP id current | 11138220 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (disease-free survival) |
Or beta | 2.76 |
%95 Ci | [1.77-4.31] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | disease free survival, rectum cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_1000657 |
Study accession | GCST002821 |