Human SNP ID | rs11136000 |
---|---|
Human chromosome | chr8 |
Human SNP position | 27607002 |
Pig chromosome | chr14 |
Pig SNP position | 12524108 |
PubMed ID | 19734902 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19734902 |
Study | Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer__s disease. |
Disease/Trait | Alzheimer__s disease |
Initial sample | 3,941 European ancestry cases, 7,848 European ancestry controls |
Replication sample | 2,023 European ancestry cases, 2,340 European ancestry controls |
Region | 8p21.1 |
Chromosome id | chr8 |
Chromosome position | 27607002 |
Reported gene | CLU |
Mapped gene | CLU |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1191 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11136000-? |
SNPs | rs11136000 |
Merged | 0 |
SNP id current | 11136000 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.6 |
P value | 0.0000000009 |
Pvalue mlog | 9.04575749056067 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.11-1.22] |
Platform | Illumina [529205] |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST000479 |
PubMed ID | 19734903 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19734903 |
Study | Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer__s disease. |
Disease/Trait | Alzheimer__s disease |
Initial sample | 2,032 European ancestry cases, 5,328 European ancestry controls |
Replication sample | 3,978 European ancestry cases, 3,297 European ancestry controls |
Region | 8p21.1 |
Chromosome id | chr8;8;8 |
Chromosome position | 27611345;27598736;27607002 |
Reported gene | CLU |
Mapped gene | CLU; CLU; CLU |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9331888-G; rs2279590-C; rs11136000-C |
SNPs | rs9331888; rs2279590; rs11136000 |
Merged | 0 |
SNP id current | |
Context | 5_prime_UTR_variant; non_coding_transcript_exon_variant; intron_variant |
Intergenic | |
Allele frequency | 0.26 |
P value | 0.0000000006 |
Pvalue mlog | 9.22184874961635 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.14-1.29] |
Platform | Illumina [537029] |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST000480 |