SNP Detail For rs11136000
1.Mapping Information
Human SNP ID rs11136000
Human chromosome chr8
Human SNP position 27607002
Pig chromosome chr14
Pig SNP position 12524108
2.Annotation Information
PubMed ID19734902
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19734902
StudyGenome-wide association study identifies variants at CLU and PICALM associated with Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample3,941 European ancestry cases, 7,848 European ancestry controls
Replication sample2,023 European ancestry cases, 2,340 European ancestry controls
Region8p21.1
Chromosome idchr8
Chromosome position27607002
Reported geneCLU
Mapped geneCLU
Upstream gene id
Downstream gene id
SNP gene ids1191
Upstream gene distance
Downstream gene distance
SNP risk allelers11136000-?
SNPsrs11136000
Merged0
SNP id current11136000
Contextintron_variant
Intergenic0
Allele frequency0.6
P value0.0000000009
Pvalue mlog9.04575749056067
P value text
Or beta1.16
%95 Ci[1.11-1.22]
PlatformIllumina [529205]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000479
PubMed ID19734903
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19734903
StudyGenome-wide association study identifies variants at CLU and CR1 associated with Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample2,032 European ancestry cases, 5,328 European ancestry controls
Replication sample3,978 European ancestry cases, 3,297 European ancestry controls
Region8p21.1
Chromosome idchr8;8;8
Chromosome position27611345;27598736;27607002
Reported geneCLU
Mapped geneCLU; CLU; CLU
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers9331888-G; rs2279590-C; rs11136000-C
SNPsrs9331888; rs2279590; rs11136000
Merged0
SNP id current
Context5_prime_UTR_variant; non_coding_transcript_exon_variant; intron_variant
Intergenic
Allele frequency0.26
P value0.0000000006
Pvalue mlog9.22184874961635
P value text
Or beta1.22
%95 Ci[1.14-1.29]
PlatformIllumina [537029]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000480