Human SNP ID | rs11134474 |
---|---|
Human chromosome | chr5 |
Human SNP position | 155775518 |
Pig chromosome | chr16 |
Pig SNP position | 73357151 |
PubMed ID | 22006218 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22006218 |
Study | Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence. |
Disease/Trait | Smoking behavior |
Initial sample | 8,842 Korean ancestry individuals |
Replication sample | 1,366 African American individuals, 671 European ancestry individuals |
Region | 5q33.2 |
Chromosome id | chr5 |
Chromosome position | 155775518 |
Reported gene | intergenic |
Mapped gene | PPIGP1 - SGCD |
Upstream gene id | 100131033 |
Downstream gene id | 6444 |
SNP gene ids | |
Upstream gene distance | 281706 |
Downstream gene distance | 342416 |
SNP risk allele | rs11134474-? |
SNPs | rs11134474 |
Merged | 0 |
SNP id current | 11134474 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [352228] |
CNV | N |
Mapped trait | smoking behavior |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318 |
Study accession | GCST001286 |