SNP Detail For rs11134474
1.Mapping Information
Human SNP ID rs11134474
Human chromosome chr5
Human SNP position 155775518
Pig chromosome chr16
Pig SNP position 73357151
2.Annotation Information
PubMed ID22006218
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22006218
StudyLarge-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.
Disease/TraitSmoking behavior
Initial sample8,842 Korean ancestry individuals
Replication sample1,366 African American individuals, 671 European ancestry individuals
Region5q33.2
Chromosome idchr5
Chromosome position155775518
Reported geneintergenic
Mapped genePPIGP1 - SGCD
Upstream gene id100131033
Downstream gene id6444
SNP gene ids
Upstream gene distance281706
Downstream gene distance342416
SNP risk allelers11134474-?
SNPsrs11134474
Merged0
SNP id current11134474
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix [352228]
CNVN
Mapped traitsmoking behavior
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318
Study accessionGCST001286