SNP Detail For rs11133504
1.Mapping Information
Human SNP ID rs11133504
Human chromosome chr4
Human SNP position 57514156
Pig chromosome chr14
Pig SNP position 103265040
2.Annotation Information
PubMed ID25082827
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25082827
StudyA genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.
Disease/TraitUlcerative colitis
Initial sampleup to 7,483 European ancestry cases, up to 21,211 European ancestry controls
Replication sample1,073 European ancestry cases, 1,279 European ancestry controls
Region4q12
Chromosome idchr4
Chromosome position57514156
Reported geneintergenic
Mapped geneLOC101928851 - LOC105377670
Upstream gene id101928851
Downstream gene id105377670
SNP gene ids
Upstream gene distance48170
Downstream gene distance335701
SNP risk allelers11133504-?
SNPsrs11133504
Merged0
SNP id current11133504
Contextintergenic_variant
Intergenic1
Allele frequency0.86
P value0.0000001
Pvalue mlog7
P value text(Southern European)
Or beta1.33
%95 Ci[1.14-1.59]
PlatformIllumina [546271]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST002548