SNP Detail For rs11129640
1.Mapping Information
Human SNP ID rs11129640
Human chromosome chr3
Human SNP position 35101019
Pig chromosome chr13
Pig SNP position 22420160
2.Annotation Information
PubMed ID21116278
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/21116278
StudyGenome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease.
Disease/TraitEntorhinal cortical thickness
Initial sample424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls
Replication sampleNA
Region3p22.3
Chromosome idchr3
Chromosome position35101019
Reported geneARPP-21
Mapped geneLOC101928135
Upstream gene id
Downstream gene id
SNP gene ids101928135
Upstream gene distance
Downstream gene distance
SNP risk allelers11129640-?
SNPsrs11129640
Merged0
SNP id current11129640
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta0.123
%95 Ci[NR] unit decrease
PlatformIllumina [478011]
CNVN
Mapped traitcortical thickness
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004840
Study accessionGCST000894