SNP Detail For rs11129295
1.Mapping Information
Human SNP ID rs11129295
Human chromosome chr3
Human SNP position 27747289
Pig chromosome chr13
Pig SNP position 15941684
2.Annotation Information
PubMed ID21833088
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21833088
StudyGenetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample9,772 European ancestry cases, 16,849 European ancestry controls
Replication sample4,218 European ancestry cases, 7,296 European ancestry controls
Region3p24.1
Chromosome idchr3
Chromosome position27747289
Reported geneEOMES
Mapped geneEOMES - LOC105377007
Upstream gene id8320
Downstream gene id105377007
SNP gene ids
Upstream gene distance24574
Downstream gene distance50299
SNP risk allelers11129295-A
SNPsrs11129295
Merged0
SNP id current11129295
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000000001
Pvalue mlog9
P value text(Conditioned on rs669607)
Or beta1.11
%95 Ci[1.09-1.12]
PlatformIllumina [465434]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001198