SNP Detail For rs11126666
1.Mapping Information
Human SNP ID rs11126666
Human chromosome chr2
Human SNP position 26705943
Pig chromosome chr3
Pig SNP position 119312100
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region2p23.3
Chromosome idchr2
Chromosome position26705943
Reported geneKCNK3
Mapped geneKCNK3
Upstream gene id
Downstream gene id
SNP gene ids3777
Upstream gene distance
Downstream gene distance
SNP risk allelers11126666-A
SNPsrs11126666
Merged0
SNP id current11126666
Contextintron_variant
Intergenic0
Allele frequency0.285
P value0.00000001
Pvalue mlog8
P value text(EA, men)
Or beta0.026
%95 Ci[0.017-0.035] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region2p23.3
Chromosome idchr2
Chromosome position26705943
Reported geneKCNK3
Mapped geneKCNK3
Upstream gene id
Downstream gene id
SNP gene ids3777
Upstream gene distance
Downstream gene distance
SNP risk allelers11126666-A
SNPsrs11126666
Merged0
SNP id current11126666
Contextintron_variant
Intergenic0
Allele frequency0.283
P value0.000000001
Pvalue mlog9
P value text(EA)
Or beta0.021
%95 Ci[0.014-0.027] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region2p23.3
Chromosome idchr2
Chromosome position26705943
Reported geneKCNK3
Mapped geneKCNK3
Upstream gene id
Downstream gene id
SNP gene ids3777
Upstream gene distance
Downstream gene distance
SNP risk allelers11126666-A
SNPsrs11126666
Merged0
SNP id current11126666
Contextintron_variant
Intergenic0
Allele frequency0.283
P value0.000000001
Pvalue mlog9
P value text
Or beta0.02
%95 Ci[0.014-0.027] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783