Human SNP ID | rs11122895 |
---|---|
Human chromosome | chr2 |
Human SNP position | 111712578 |
Pig chromosome | chr3 |
Pig SNP position | 46442596 |
PubMed ID | 23817571 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23817571 |
Study | Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization. |
Disease/Trait | Allergic sensitization |
Initial sample | 5,789 European ancestry cases, 10,056 European ancestry controls |
Replication sample | 6,114 European ancestry cases, 9,920 European ancestry controls |
Region | 2q13 |
Chromosome id | chr2 |
Chromosome position | 111712578 |
Reported gene | ANAPC1 |
Mapped gene | LOC105373987 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105373987 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11122895-T |
SNPs | rs11122895 |
Merged | 0 |
SNP id current | 11122895 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.05-1.13] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | allergic sensitization measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005298 |
Study accession | GCST002084 |