Human SNP ID | rs11122834 |
---|---|
Human chromosome | chr2 |
Human SNP position | 120943713 |
Pig chromosome | chr15 |
Pig SNP position | 35365339 |
PubMed ID | 20932654 |
---|---|
Journal | Int J Radiat Oncol Biol Phys |
Link | www.ncbi.nlm.nih.gov/pubmed/20932654 |
Study | Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer. |
Disease/Trait | Erectile dysfunction and prostate cancer treatment |
Initial sample | 27 African American cases, 52 African American controls |
Replication sample | NA |
Region | 2q14.2 |
Chromosome id | chr2 |
Chromosome position | 120943713 |
Reported gene | GLI2 |
Mapped gene | GLI2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2736 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11122834-? |
SNPs | rs11122834 |
Merged | 0 |
SNP id current | 11122834 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 4.93 |
%95 Ci | [NR] |
Platform | Affymetrix [512497] |
CNV | N |
Mapped trait | response to radiation, prostate carcinoma, erectile dysfunction |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0009314, http://www.ebi.ac.uk/efo/EFO_0001663, http://www.ebi.ac.uk/efo/EFO_0004234 |
Study accession | GCST000824 |