SNP Detail For rs11118883
1.Mapping Information
Human SNP ID rs11118883
Human chromosome chr1
Human SNP position 221887680
Pig chromosome chr10
Pig SNP position 13135832
2.Annotation Information
PubMed ID25990418
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/25990418
StudyA new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.
Disease/TraitColorectal cancer
Initial sample7,577 European ancestry cases, 9,979 European ancestry controls
Replication sampleNA
Region1q41
Chromosome idchr1
Chromosome position221887680
Reported geneDUSP10
Mapped geneLOC101929771 - LOC105372950
Upstream gene id101929771
Downstream gene id105372950
SNP gene ids
Upstream gene distance47014
Downstream gene distance26082
SNP risk allelers11118883-A
SNPsrs11118883
Merged0
SNP id current11118883
Contextintron_variant
Intergenic1
Allele frequency0.35
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.12
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 10000000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST002919