Human SNP ID | rs11118883 |
---|---|
Human chromosome | chr1 |
Human SNP position | 221887680 |
Pig chromosome | chr10 |
Pig SNP position | 13135832 |
PubMed ID | 25990418 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/25990418 |
Study | A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer. |
Disease/Trait | Colorectal cancer |
Initial sample | 7,577 European ancestry cases, 9,979 European ancestry controls |
Replication sample | NA |
Region | 1q41 |
Chromosome id | chr1 |
Chromosome position | 221887680 |
Reported gene | DUSP10 |
Mapped gene | LOC101929771 - LOC105372950 |
Upstream gene id | 101929771 |
Downstream gene id | 105372950 |
SNP gene ids | |
Upstream gene distance | 47014 |
Downstream gene distance | 26082 |
SNP risk allele | rs11118883-A |
SNPs | rs11118883 |
Merged | 0 |
SNP id current | 11118883 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.35 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.12 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 10000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002919 |