PigVar
Overview
Pig SNPs
SNP Table
SNP Hit on Gene
SNP Coding
SNP lincRNA
Search SNPs by Region
Browse on Chromosome
SV
Positive Selection
Help
Manual
Pipeline
Data Statistics
Contact Us
Download
SNP Detail For rs11118844
1.Mapping Information
| Human SNP ID | rs11118844 |
|---|---|
| Human chromosome | chr1 |
| Human SNP position | 221736946 |
| Pig chromosome | chr10 |
| Pig SNP position | 13010885 |
2.Annotation Information
| PubMed ID | 26451028 |
|---|---|
| Journal | Stroke |
| Link | www.ncbi.nlm.nih.gov/pubmed/26451028 |
| Study | White Matter Lesion Progression: Genome-Wide Search for Genetic Influences. |
| Disease/Trait | White matter lesion progression (adjusted for white matter lesion burden at baseline) |
| Initial sample | 1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls |
| Replication sample | NA |
| Region | 1q41 |
| Chromosome id | chr1 |
| Chromosome position | 221736946 |
| Reported gene | DUSP10 |
| Mapped gene | DUSP10 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 11221 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11118844-A |
| SNPs | rs11118844 |
| Merged | |
| SNP id current | 11118844 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.86 |
| P value | 0.000007 |
| Pvalue mlog | 5.15490195998574 |
| P value text | |
| Or beta | 1.49 |
| %95 Ci | [NR] |
| Platform | Affymetrix, Illumina [up to 2543887] (imputed) |
| CNV | N |
| Mapped trait | white matter lesion progression measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007746 |
| Study accession | GCST003152 |
| PubMed ID | 26451028 |
| Journal | Stroke |
| Link | www.ncbi.nlm.nih.gov/pubmed/26451028 |
| Study | White Matter Lesion Progression: Genome-Wide Search for Genetic Influences. |
| Disease/Trait | White matter lesion progression |
| Initial sample | 1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls |
| Replication sample | NA |
| Region | 1q41 |
| Chromosome id | chr1 |
| Chromosome position | 221736946 |
| Reported gene | DUSP10 |
| Mapped gene | DUSP10 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 11221 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11118844-A |
| SNPs | rs11118844 |
| Merged | |
| SNP id current | 11118844 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.855 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | |
| Or beta | 1.46 |
| %95 Ci | [NR] |
| Platform | Affymetrix, Illumina [up to 2543887] (imputed) |
| CNV | N |
| Mapped trait | white matter lesion progression measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007746 |
| Study accession | GCST003151 |
|
Kunming Institute of Zoology, CAS
and Xi'an University of Technology ©2014-2017 All Rights Reserved.
|
|