Human SNP ID | rs11115148 |
---|---|
Human chromosome | chr12 |
Human SNP position | 81995345 |
Pig chromosome | chr5 |
Pig SNP position | 104391762 |
PubMed ID | 21844884 |
---|---|
Journal | Pharmacogenomics J |
Link | www.ncbi.nlm.nih.gov/pubmed/21844884 |
Study | Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations |
Disease/Trait | Response to platinum-based chemotherapy (cisplatin) |
Initial sample | 176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 12q21.31 |
Chromosome id | chr12 |
Chromosome position | 81995345 |
Reported gene | intergenic |
Mapped gene | LOC101928449 - LOC105369873 |
Upstream gene id | 101928449 |
Downstream gene id | 105369873 |
SNP gene ids | |
Upstream gene distance | 2212 |
Downstream gene distance | 143000 |
SNP risk allele | rs11115148-? |
SNPs | rs11115148 |
Merged | 0 |
SNP id current | 11115148 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | NR [~ 3000000] (imputed) |
CNV | N |
Mapped trait | response to cisplatin |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0072718 |
Study accession | GCST001201 |