Human SNP ID | rs11109072 |
---|---|
Human chromosome | chr12 |
Human SNP position | 97507492 |
Pig chromosome | chr5 |
Pig SNP position | 90605380 |
PubMed ID | 23563609 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563609 |
Study | Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity. |
Disease/Trait | Obesity (early onset extreme) |
Initial sample | 1,509 European ancestry cases, 5,380 European ancestry controls |
Replication sample | 971 European ancestry cases, 1,990 European ancestry controls |
Region | 12q23.1 |
Chromosome id | chr12 |
Chromosome position | 97507492 |
Reported gene | RMST |
Mapped gene | RMST |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 196475 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11109072-A |
SNPs | rs11109072 |
Merged | 0 |
SNP id current | 11109072 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.67 |
%95 Ci | [1.41-1.99] |
Platform | Affymetrix [~ 2000000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001957 |