SNP Detail For rs11109072
1.Mapping Information
Human SNP ID rs11109072
Human chromosome chr12
Human SNP position 97507492
Pig chromosome chr5
Pig SNP position 90605380
2.Annotation Information
PubMed ID23563609
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563609
StudyGenome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.
Disease/TraitObesity (early onset extreme)
Initial sample1,509 European ancestry cases, 5,380 European ancestry controls
Replication sample971 European ancestry cases, 1,990 European ancestry controls
Region12q23.1
Chromosome idchr12
Chromosome position97507492
Reported geneRMST
Mapped geneRMST
Upstream gene id
Downstream gene id
SNP gene ids196475
Upstream gene distance
Downstream gene distance
SNP risk allelers11109072-A
SNPsrs11109072
Merged0
SNP id current11109072
Contextintron_variant
Intergenic0
Allele frequency0.03
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.67
%95 Ci[1.41-1.99]
PlatformAffymetrix [~ 2000000] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001957