SNP Detail For rs11107616
1.Mapping Information
Human SNP ID rs11107616
Human chromosome chr12
Human SNP position 77971000
Pig chromosome chr5
Pig SNP position 108349745
2.Annotation Information
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region12q21.2
Chromosome idchr12
Chromosome position77971000
Reported geneNAV3
Mapped geneNAV3
Upstream gene id
Downstream gene id
SNP gene ids89795
Upstream gene distance
Downstream gene distance
SNP risk allelers11107616-C
SNPsrs11107616
Merged
SNP id current11107616
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(additive )
Or beta1.38
%95 Ci[1.21-1.57]
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098