SNP Detail For rs1110403
1.Mapping Information
Human SNP ID rs1110403
Human chromosome chr9
Human SNP position 107621302
Pig chromosome chr1
Pig SNP position 279178188
2.Annotation Information
PubMed ID25342443
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25342443
StudyGenome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.
Disease/TraitPercent mammographic density
Initial sample7,916 European ancestry individuals
Replication sample343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals
Region9q31.2
Chromosome idchr9
Chromosome position107621302
Reported geneintergenic
Mapped geneLOC105376205
Upstream gene id
Downstream gene id
SNP gene ids105376205
Upstream gene distance
Downstream gene distance
SNP risk allelers1110403-A
SNPsrs1110403
Merged0
SNP id current1110403
Contextintergenic_variant
Intergenic0
Allele frequency0.58
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitmammographic density percentage, mammographic density measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006502, http://www.ebi.ac.uk/efo/EFO_0005941
Study accessionGCST002669