Human SNP ID | rs1110403 |
---|---|
Human chromosome | chr9 |
Human SNP position | 107621302 |
Pig chromosome | chr1 |
Pig SNP position | 279178188 |
PubMed ID | 25342443 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25342443 |
Study | Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk. |
Disease/Trait | Percent mammographic density |
Initial sample | 7,916 European ancestry individuals |
Replication sample | 343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals |
Region | 9q31.2 |
Chromosome id | chr9 |
Chromosome position | 107621302 |
Reported gene | intergenic |
Mapped gene | LOC105376205 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376205 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1110403-A |
SNPs | rs1110403 |
Merged | 0 |
SNP id current | 1110403 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.58 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | mammographic density percentage, mammographic density measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006502, http://www.ebi.ac.uk/efo/EFO_0005941 |
Study accession | GCST002669 |