SNP Detail For rs11103429
1.Mapping Information
Human SNP ID rs11103429
Human chromosome chr9
Human SNP position 134614732
Pig chromosome chr1
Pig SNP position 307875629
2.Annotation Information
PubMed ID23665963
JournalInflamm Bowel Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/23665963
StudyMultidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn__s disease.
Disease/TraitCrohn__s disease (need for surgery)
Initial sample239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years
Replication sampleNA
Region9q34.3
Chromosome idchr9
Chromosome position134614732
Reported geneCOL5A1, RXRA
Mapped geneLOC100506532 - COL5A1
Upstream gene id100506532
Downstream gene id1289
SNP gene ids
Upstream gene distance69500
Downstream gene distance27054
SNP risk allelers11103429-G
SNPsrs11103429
Merged0
SNP id current11103429
Contextintergenic_variant
Intergenic1
Allele frequency0.05
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta3.6
%95 Ci[2.10-6.30]
PlatformIllumina [483359]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST002017