Human SNP ID | rs11103429 |
---|---|
Human chromosome | chr9 |
Human SNP position | 134614732 |
Pig chromosome | chr1 |
Pig SNP position | 307875629 |
PubMed ID | 23665963 |
---|---|
Journal | Inflamm Bowel Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/23665963 |
Study | Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn__s disease. |
Disease/Trait | Crohn__s disease (need for surgery) |
Initial sample | 239 European ancestry cases that required surgery within 5 year, 375 European ancestry cases that did not require surgery within 5 years |
Replication sample | NA |
Region | 9q34.3 |
Chromosome id | chr9 |
Chromosome position | 134614732 |
Reported gene | COL5A1, RXRA |
Mapped gene | LOC100506532 - COL5A1 |
Upstream gene id | 100506532 |
Downstream gene id | 1289 |
SNP gene ids | |
Upstream gene distance | 69500 |
Downstream gene distance | 27054 |
SNP risk allele | rs11103429-G |
SNPs | rs11103429 |
Merged | 0 |
SNP id current | 11103429 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.05 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 3.6 |
%95 Ci | [2.10-6.30] |
Platform | Illumina [483359] |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST002017 |