SNP Detail For rs11086243
1.Mapping Information
Human SNP ID rs11086243
Human chromosome chr20
Human SNP position 48150492
Pig chromosome chr17
Pig SNP position 56679554
2.Annotation Information
PubMed ID21441931
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21441931
StudyCommon variation in GPC5 is associated with acquired nephrotic syndrome.
Disease/TraitNephrotic syndrome (acquired)
Initial sample195 Japanese ancestry cases, 1,546 Japanese ancestry controls
Replication sample662 Japanese ancestry cases, 4,919 Japanese ancestry controls
Region20q13.13
Chromosome idchr20
Chromosome position48150492
Reported geneSULF2, PREX1
Mapped geneLOC105372640 - LOC105372641
Upstream gene id105372640
Downstream gene id105372641
SNP gene ids
Upstream gene distance23678
Downstream gene distance41846
SNP risk allelers11086243-T
SNPsrs11086243
Merged0
SNP id current11086243
Contextintergenic_variant
Intergenic1
Allele frequency0.23
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.37
%95 Ci[1.20-1.57]
PlatformPerlegen [205203]
CNVN
Mapped traitnephrotic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004255
Study accessionGCST001018