Human SNP ID | rs11086243 |
---|---|
Human chromosome | chr20 |
Human SNP position | 48150492 |
Pig chromosome | chr17 |
Pig SNP position | 56679554 |
PubMed ID | 21441931 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21441931 |
Study | Common variation in GPC5 is associated with acquired nephrotic syndrome. |
Disease/Trait | Nephrotic syndrome (acquired) |
Initial sample | 195 Japanese ancestry cases, 1,546 Japanese ancestry controls |
Replication sample | 662 Japanese ancestry cases, 4,919 Japanese ancestry controls |
Region | 20q13.13 |
Chromosome id | chr20 |
Chromosome position | 48150492 |
Reported gene | SULF2, PREX1 |
Mapped gene | LOC105372640 - LOC105372641 |
Upstream gene id | 105372640 |
Downstream gene id | 105372641 |
SNP gene ids | |
Upstream gene distance | 23678 |
Downstream gene distance | 41846 |
SNP risk allele | rs11086243-T |
SNPs | rs11086243 |
Merged | 0 |
SNP id current | 11086243 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.23 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.20-1.57] |
Platform | Perlegen [205203] |
CNV | N |
Mapped trait | nephrotic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004255 |
Study accession | GCST001018 |