SNP Detail For rs11085466
1.Mapping Information
Human SNP ID rs11085466
Human chromosome chr19
Human SNP position 21569009
Pig chromosome chr2
Pig SNP position 66748656
2.Annotation Information
PubMed ID26621817
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26621817
StudyMeta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.
Disease/TraitColorectal or endometrial cancer
Initial sample5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls
Replication sampleNA
Region19p12
Chromosome idchr19
Chromosome position21569009
Reported geneZNF429
Mapped geneZNF429 - LOC101929007
Upstream gene id353088
Downstream gene id101929007
SNP gene ids
Upstream gene distance27852
Downstream gene distance893
SNP risk allelers11085466-G
SNPsrs11085466
Merged0
SNP id current11085466
Contextintron_variant
Intergenic1
Allele frequency0.782
P value0.0000002
Pvalue mlog6.69897000433601
P value text(same direction)
Or beta1.15
%95 Ci[1.09-1.22]
PlatformIllumina [up to 6000000] (imputed)
CNVN
Mapped traitcolorectal cancer, endometrial neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230
Study accessionGCST003209