Human SNP ID | rs11085466 |
---|---|
Human chromosome | chr19 |
Human SNP position | 21569009 |
Pig chromosome | chr2 |
Pig SNP position | 66748656 |
PubMed ID | 26621817 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26621817 |
Study | Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1. |
Disease/Trait | Colorectal or endometrial cancer |
Initial sample | 5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls |
Replication sample | NA |
Region | 19p12 |
Chromosome id | chr19 |
Chromosome position | 21569009 |
Reported gene | ZNF429 |
Mapped gene | ZNF429 - LOC101929007 |
Upstream gene id | 353088 |
Downstream gene id | 101929007 |
SNP gene ids | |
Upstream gene distance | 27852 |
Downstream gene distance | 893 |
SNP risk allele | rs11085466-G |
SNPs | rs11085466 |
Merged | 0 |
SNP id current | 11085466 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.782 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (same direction) |
Or beta | 1.15 |
%95 Ci | [1.09-1.22] |
Platform | Illumina [up to 6000000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer, endometrial neoplasm |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0004230 |
Study accession | GCST003209 |