Human SNP ID | rs11083271 |
---|---|
Human chromosome | chr18 |
Human SNP position | 28346095 |
Pig chromosome | chr6 |
Pig SNP position | 105643796 |
PubMed ID | 20708005 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/20708005 |
Study | Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. |
Disease/Trait | Non-alcoholic fatty liver disease histology (lobular) |
Initial sample | 236 European ancestry cases |
Replication sample | NA |
Region | 18q12.1 |
Chromosome id | chr18 |
Chromosome position | 28346095 |
Reported gene | intergenic |
Mapped gene | CDH2 - LOC105372043 |
Upstream gene id | 1000 |
Downstream gene id | 105372043 |
SNP gene ids | |
Upstream gene distance | 168614 |
Downstream gene distance | 373102 |
SNP risk allele | rs11083271-A |
SNPs | rs11083271 |
Merged | 0 |
SNP id current | 11083271 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.34 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.61 |
%95 Ci | [NR] unit increase |
Platform | Illumina [324623] |
CNV | N |
Mapped trait | non-alcoholic fatty liver disease, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST000766 |