SNP Detail For rs11083271
1.Mapping Information
Human SNP ID rs11083271
Human chromosome chr18
Human SNP position 28346095
Pig chromosome chr6
Pig SNP position 105643796
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (lobular)
Initial sample236 European ancestry cases
Replication sampleNA
Region18q12.1
Chromosome idchr18
Chromosome position28346095
Reported geneintergenic
Mapped geneCDH2 - LOC105372043
Upstream gene id1000
Downstream gene id105372043
SNP gene ids
Upstream gene distance168614
Downstream gene distance373102
SNP risk allelers11083271-A
SNPsrs11083271
Merged0
SNP id current11083271
Contextintergenic_variant
Intergenic1
Allele frequency0.34
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.61
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000766